Top hat rusted into piston tube is easily polished out and would only be of concern if an indication gun had at some stage been submerged in water.
Bearings on piston should have avoided metal to metal contact in comp. tube.
Rust external on comp. tube, again easily polished. Only rust in swept area critical. If light, polish out and use an Aussie Gamo parachute seal to compensate for any enlargement.
A pull through of barrel might indicate presence of rust.
"Complete new cocking assembly", on a gun that "looks like its never been used", suggests a take apart, polish and grease should be the first consideration.
Warranty. Unless returning gun for full repayment, my inclination would be to do work myself. Only a full strip down will indicate extent of work, at which stage, fixing is often simpler than getting it done by others.